Publications

These are publications which involve OPTIMISE in some way — such as papers on which Action members are named authors, which relate to the objectives of one or more of our Working Groups. If you have a publication which involves OPTIMISE, please send it to the Action Manager so that it can be added to the list.

2014:

• Rossini, M., L. Alonso, S. Cogliati, A. Damm, L. Guanter, T. Julitta, M. Meroni et al. “Measuring sun-induced chlorophyll fluorescence: An evaluation and synthesis of existing field data.” stress 1 (2014): 3.
• Cogliati, S., M. Rossini, A. Schickling, F. Pinto, L. Alonso, J. Vicent, N. Sabater, R. Colombo, U. Rascher, and W. Verhoef. “Retrieval of sun induced fluorescence using advanced spectral fitting methods from radiative transfer simulations and hyplant imagery.” In Proceedings of the 5th International. Workshop on Remote Sensing of Vegetation Fluorescence, Paris, France, vol. 2224. 2014.
• Colombo, R., L. Alonso, M. Celesti, S. Cogliati, A. Damm, M. Drusch, L. Guanter et al. “Remote sensing of sun-induced chlorophyll fluorescence at different scales.” In Hyperspectral Image and Signal Processing: Evolution in Remote Sensing (WHISPERS), 2014 6th Workshop on, pp. 1-4. IEEE, 2014.

2015:

• Burkart, A.; Schickling, A.; Mateo, M.P.C.; Wrobel, T.J.; Rossini, M.; Cogliati, S.; Julitta, T.; Rascher, U. (2015) A Method for Uncertainty Assessment of Passive Sun-Induced Chlorophyll Fluorescence Retrieval Using an Infrared Reference Light. Sensors Journal, IEEE , 15(8): 4603-4611, 2015
• Cendrero-Mateo, M. P., Carmo-Silva, A. E., Porcar-Castell, A., Hamerlynck, E. P., Papuga, S. A., & Moran, M. S. (2015). Dynamic response of plant chlorophyll fluorescence to light, water and nutrient availability. Functional Plant Biology, 42(8), 746-757. DOI: 10.1071/FP15002
• Rascher U., Alonso L., Burkart A., Cilia C., Cogliati S., Colombo R., Damm A., Drusch M., Guanter L., Hanus J., Hyvärinen T., Julitta T., Jussila J., Kataja K., Kokkalis P., Kraft S., Kraska T., Matveeva M., Moreno J., Muller O., Panigada C., Pikl M., Pinto F., Prey L., Pude R., Rossini M., Schickling A., Schurr U., Schüttemeyer D., Verrelst J. & Zemek F. (2015) Sun -induced fluorescence – a new probe of photosynthesis: First maps from the imaging spectrometer HyPlant. Global Change Biology; doi: 10.1111/gcb.13017
• S. Cogliati, M. Rossini, T. Julitta, M. Meroni, A. Schickling, A. Burkart, F. Pinto, U. Rascher, R. Colombo (2015) Continuous and long-term measurements of reflectance and sun-induced chlorophyll fluorescence by using novel automated field spectroscopy systems”. Remote Sensing of Environment, 164: 270-281.
• A. Porcar-Castell, A. Mac Arthur, M. Rossini, L. Eklundh, J. Pacheco-Labrador, K. Anderson, M. Balzarolo, M.P. Martín, H. Jin, E. Tomelleri, S. Cerasoli, K. Sakowska, A. Hueni, T. Julitta, C.J. Nichol, L. Vescovo (2015) EUROSPEC: at the interface between remote-sensing and ecosystem CO2 flux measurements in Europe. Biogeosciences, 12: 6103-6124.
• Wingate, Lisa, Jérôme Ogée, Edoardo Cremonese, Gianluca Filippa, Toshie Mizunuma, Mirco Migliavacca, Christophe Moisy et al. “Interpreting canopy development and physiology using a European phenology camera network at flux sites.” Biogeosciences 12, no. 20 (2015): 5995.
• Rossini, Micol, Franco Miglietta, Uwe Rascher, Chiara Cilia, Sergio Cogliati, Emiliano Bozzi, Marcin Stróżecki et al. “Monitoring the evolution of plant photosynthetic performances using ground sun-induced fluorescence measurements.” In 9th EARSel Imaging Spectroscopy Workshop, no. FZJ-2015-03092. Pflanzenwissenschaften, 2015.
• Cendrero-Mateo, M. Pilar, M. Susan Moran, Shirley A. Papuga, K. R. Thorp, L. Alonso, J. Moreno, Guillermo Ponce-Campos, U. Rascher, and G. Wang. “Plant chlorophyll fluorescence: active and passive measurements at canopy and leaf scales with different nitrogen treatments.” Journal of experimental botany 67, no. 1 (2015): 275-286.
• Schaepman, Michael E., Michael Jehle, Andreas Hueni, Petra D’Odorico, Alexander Damm, Jürg Weyermann, Fabian D. Schneider et al. “Advanced radiometry measurements and Earth science applications with the Airborne Prism Experiment (APEX).” Remote Sensing of Environment 158 (2015): 207-219.
• Verrelst, Jochem, Juan Pablo Rivera, Christiaan van der Tol, Federico Magnani, Gina Mohammed, and Jose Moreno. “Global sensitivity analysis of the SCOPE model: What drives simulated canopy-leaving sun-induced fluorescence?.” Remote Sensing of Environment 166 (2015): 8-21.
• Cogliati, S., W. Verhoef, S. Kraft, N. Sabater, L. Alonso, J. Vicent, J. Moreno, M. Drusch, and R. Colombo. “Retrieval of sun-induced fluorescence using advanced spectral fitting methods.” Remote sensing of environment 169 (2015): 344-357.

         2016:

• Cendrero-Mateo, M. Pilar et al. “Plant Chlorophyll Fluorescence: Active and Passive Measurements at Canopy and Leaf Scales with Different Nitrogen Treatments.” Journal of Experimental Botany 67.1 (2016): 275–286. PMC. Web. 22 Feb. 2018.
• van der Tol, C., Rossini, M., Cogliati, S., Verhoef, W., Colombo, R., Rascher, U., & Mohammed, G. (2016). A model and measurement comparison of diurnal cycles of sun -induced chlorophyll fluorescence of crops. Remote Sensing of Environment, 186, 663 -677.
• Häusler, M., Silva, J. M. N., Cerasoli, S., Lopez Saldana, G. and Pereira, J. M. C. (2016) Modelling spectral reflectance of open cork oak woodland: a simulation analysis of the effects of vegetation structure and background. International Journal of Remote Sensing, 37 (3). pp. 492-515. ISSN 0143-1161
• Cerasoli, S., F. C. Silva and J. M. N. Silva (2016). Temporal dynamics of spectral bioindicators evidence biological and ecological differences among functional types in a cork oak open woodland. International Journal of Biometeorology, 60(6): 813 -825, DOI: 10.1007/s00484 -015 – 1075
• Inoue, Y., Guerif, M, Baret, F., Skidmore, A., Gitelson, A., Schlerf, M., Olioso, A. (2016). Simple and robust methods for remote sensing of canopy chlorophyll content: a comparative analysis of hyperspectral data for different types of vegetation, Plant, Cell and Environment, doi:10.1111/pce.12815
• Hueni, A., Damm, A., Kneubuehler, M., Schläpfer, D. and Schaepman, M. (2016). “Field and Airborne Spectroscopy Cross – Validation – Some Considerations.” IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing PP(99): 1 – 19.
• Gitelson, A. A., Peng, Y., Vina, A., Arkebauer, T., Schepers, J. S. (2016). Efficiency of chlorophyll in gross primary productivity: A proof of concept and application in crops. Journal of Plant Physiology, 201, 101–110, http://dx.doi.org/10.1016/j.jplph.2016.05.019
• Dechant, Benjamin & Cuntz, Matthias & Doktor, Daniel & Vohland, Michael. (2016). Mechanisms behind the estimation of photosynthesis traits from leaf reflectance observations.
• Rossini, Micol, Michele Meroni, Marco Celesti, Sergio Cogliati, Tommaso Julitta, Cinzia Panigada, Uwe Rascher, Christiaan van der Tol, and Roberto Colombo. “Analysis of red and far-red sun-induced chlorophyll fluorescence and their ratio in different canopies based on observed and modeled data.” Remote sensing 8, no. 5 (2016): 412.
• Julitta, Tommaso, Micol Rossini, Andreas Burkart, Sergio Cogliati, Neville Davies, Milton Hom, Alasdair Mac Arthur et al. “Comparison of sun-induced chlorophyll fluorescence estimates obtained from four portable field spectroradiometers.” Remote Sensing 8, no. 2 (2016): 122.
• Wieneke, S., H. Ahrends, A. Damm, F. Pinto, A. Stadler, M. Rossini, and U. Rascher. “Airborne based spectroscopy of red and far-red sun-induced chlorophyll fluorescence: Implications for improved estimates of gross primary productivity.” Remote Sensing of Environment 184 (2016): 654-667.
• Verrelst, Jochem, Christiaan van der Tol, Federico Magnani, Neus Sabater, Juan Pablo Rivera, Gina Mohammed, and Jose Moreno. “Evaluating the predictive power of sun-induced chlorophyll fluorescence to estimate net photosynthesis of vegetation canopies: A SCOPE modeling study.” Remote sensing of environment 176 (2016): 139-151.
• Vilfan, Nastassia, Christiaan van der Tol, Onno Muller, Uwe Rascher, and Wouter Verhoef. “Fluspect-B: A model for leaf fluorescence, reflectance and transmittance spectra.” Remote sensing of environment 186 (2016): 596-615.
• Sakowska, Karolina, Radoslaw Juszczak, and Damiano Gianelle. “Remote sensing of grassland biophysical parameters in the context of the Sentinel-2 satellite mission.” Journal of Sensors 2016 (2016).
• Verrelst, Jochem, Neus Sabater, Juan Pablo Rivera, Jordi Muñoz-Marí, Jorge Vicent, Gustau Camps-Valls, and José Moreno. “Emulation of leaf, canopy and atmosphere radiative transfer models for fast global sensitivity analysis.” Remote Sensing 8, no. 8 (2016): 673.

         2017:

• Dechant, Benjamin, Matthias Cuntz, Michael Vohland, Elke Schulz, and Daniel Doktor. “Estimation of photosynthesis traits from leaf reflectance spectra: Correlation to nitrogen content as the dominant mechanism.” Remote sensing of environment 196 (2017): 279-292.
• Lange, Maximilian, Benjamin Dechant, Corinna Rebmann, Michael Vohland, Matthias Cuntz, and Daniel Doktor. “Validating MODIS and sentinel-2 NDVI products at a temperate deciduous forest site using two independent ground-based sensors.” Sensors 17, no. 8 (2017): 1855.
• Migliavacca, Mirco, Oscar Perez‐Priego, Micol Rossini, Tarek S. El‐Madany, Gerardo Moreno, Christiaan van der Tol, Uwe Rascher et al. “Plant functional traits and canopy structure control the relationship between photosynthetic CO2 uptake and far‐red sun‐induced fluorescence in a Mediterranean grassland under different nutrient availability.” New Phytologist 214, no. 3 (2017): 1078-1091.
• Thum, Tea, Sönke Zaehle, Philipp Köhler, Tuula Aalto, Mika Aurela, Luis Guanter, Pasi Kolari et al. “Modelling sun-induced fluorescence and photosynthesis with a land surface model at local and regional scales in northern Europe.” Biogeosciences 14, no. 7 (2017): 1969.
• Vicent, Jorge, Neus Sabater, Jochem Verrelst, Luis Alonso, and Jose Moreno. “Assessment of approximations in aerosol optical properties and vertical distribution into FLEX atmospherically-corrected surface reflectance and retrieved Sun-Induced Fluorescence.” Remote Sensing 9, no. 7 (2017): 675.
• Sabater, Neus, Jorge Vicent, Luis Alonso, Sergio Cogliati, Jochem Verrelst, and José Moreno. “Impact of Atmospheric Inversion Effects on Solar-Induced Chlorophyll Fluorescence: Exploitation of the Apparent Reflectance as a Quality Indicator.” Remote Sensing 9, no. 6 (2017): 622.
• Springer, Kyle R., Ran Wang, and John A. Gamon. “Parallel seasonal patterns of photosynthesis, fluorescence, and reflectance indices in boreal trees.” Remote Sensing 9, no. 7 (2017): 691.
• Wang, Sheng, Filippo Bandini, Jakob Jakobsen, Pablo J. Zarco-Tejada, Christian Josef Köppl, Daniel Haugård Olesen, Andreas Ibrom, Peter Bauer-Gottwein, and Monica Garcia. “A continuous hyperspatial monitoring system of evapotranspiration and gross primary productivity from Unmanned Aerial Systems.” In EGU General Assembly Conference Abstracts, vol. 19, p. 12426. 2017.
• Wang, S., Dam-Hansen, C., Tejada, P.J.Z., Thorseth, A., Malureanu, R., Bandini, F., Jakobsen, J., Ibrom, A., Bauer-Gottwein, P. and Garcia, M., 2017. Optimizing sensitivity of Unmanned Aerial System optical sensors for low zenith angles and cloudy conditions. In 10th EARSeL SIG Imaging Spectroscopy Workshop.
• Melillos, George, Kyriacos Themistocleous, George Papadavid, Athos Agapiou, Demetris Kouhartsiouk, Maria Prodromou, Silas Michaelides, and Diofantos G. Hadjimitsis. “Using field spectroscopy combined with synthetic aperture radar (SAR) technique for detecting underground structures for defense and security applications in Cyprus.” In Detection and Sensing of Mines, Explosive Objects, and Obscured Targets XXII, vol. 10182, p. 1018206. International Society for Optics and Photonics, 2017.

         2018:

• Mihai, L.; Mac Arthur, A.; Hueni, A.; Robinson, I.; Sporea, D. Optimized Spectrometers Characterization Procedure for Near Ground Support of ESA FLEX Observations: Part 1 Spectral Calibration and Characterisation. Remote Sens. 2018, 10, 289.
• Karolina Sakowska, Giorgio Alberti, Lorenzo Genesio, Alessandro Peressotti, Gemini Delle Vedove, Damiano Gianelle, Roberto Colombo, Mirco Rodeghiero, Cinzia Panigada, Radosław Juszczak, Marco Celesti, Micol Rossini, Matthew Haworth, Benjamin W. Campbell, Jean-Philippe Mevy, Loris Vescovo, M. Pilar Cendrero-Mateo, Uwe Rascher, and Franco Miglietta (2018): Leaf and canopy photosynthesis of a chlorophyll deficient soybean mutant. Plant, Cell & Environment
• Colombo, Roberto, Marco Celesti, Remo Bianchi, Petya KE Campbell, Sergio Cogliati, Bruce D. Cook, Alexander Damm et al. “Variability of sun‐induced chlorophyll fluorescence according to stand age‐related processes in a managed loblolly pine forest.” Global change biology (2018).
• Wang, Ran, John A. Gamon, Jeannine Cavender‐Bares, Philip A. Townsend, and Arthur I. Zygielbaum. “The spatial sensitivity of the spectral diversity–biodiversity relationship: an experimental test in a prairie grassland.” Ecological Applications 28, no. 2 (2018): 541-556.
• Gholizadeh, Hamed, John A. Gamon, Arthur I. Zygielbaum, Ran Wang, Anna K. Schweiger, and Jeannine Cavender-Bares. “Remote sensing of biodiversity: Soil correction and data dimension reduction methods improve assessment of α-diversity (species richness) in prairie ecosystems.” Remote Sensing of Environment 206 (2018): 240-253.

PROCEEDINGS:

1. A. Mac Arthur, I. Robinson, “A critique of field spectroscopy and the challenges and opportunities it presents for remote sensing for agriculture, ecosystems, and hydrology”, Proc. SPIE 9637, Remote Sensing for Agriculture, Ecosystems, and Hydrology XVII, 963705 (14 October 2015); doi:10.1117/12.2201046; https://doi.org/10.1117/12.2201046.

2. H. Aasem, “State-of-the-art in uav remote sensing survey – first insights into applications of uav sensing systems”, Int. Arch. Photogramm. Remote Sens. Spatial Inf. Sci., XLII-2/W6, 1-4, 2017, https://doi.org/10.5194/isprs-archives-XLII-2-W6-1-2017.